2.5.1. Description and Significance
In its natural state, the St. Johns River, like other blackwater rivers, swamps, and sloughs, has a high concentration of colored dissolved organic material (CDOM) that stains the water a dark brown color. The natural decay of plant materials stain the water to appear somewhat like tea in color. The St. Johns River, in particular, has a varied mix of dark-stained water from rainwater flow through the slow moving backwaters, and nearly clear contributions from large springs such as Blue Spring, De Leon Springs, Silver Springs (through the Ocklawaha River), and others. Heavy rains flush tannin-stained waters out of the slow-moving sloughs, swamps, and backwaters and into the tributaries and mainstem of the LSJR. Color and turbidity are different properties of water, and both may arise from natural and anthropogenic sources. Turbidity is a reflection of how cloudy a water body appears, unlike the light absorption properties described by color, Turbidity is described on the Florida DEP website as:
Turbidity is a measure of the suspended particles in water. Several types of material cause water turbidity, these include: silt or soil particles, tiny floating organisms, and fragments of dead plants. Human activities can be the cause of turbidity as well. Runoff from farm fields, stormwater from construction sites and urban areas, shoreline erosion and heavy boat traffic all contribute to high levels of turbidity in natural waters. These high levels can greatly diminish the health and productivity of estuarine ecosystems (DEP 2009f).
Three types of particles optically scatter light in the water column: suspended solids, particles of bacterial and algal origin, and micron-sized particles of CDOM. All are present in the dominantly freshwater portion of the LSJR (Gallegos 2005); however, the turbidity is dominated by both phytoplankton (mostly single-cell plants) and suspended solids from human impact (most often sediment or industrial waste) called non-algal particulates (NAP). NAP comes from such activities as sediment erosion from construction, land clearing and timber harvesting sites; stormwater runoff in urban and industrial areas, dredging, and solids from industrial outfalls (Gallegos 2005). During heavy rains, these sources may input a large volume of NAP into tributaries of the river. To address this, Florida has an extensive storm-water permitting program to limit stormwater impact. As discussed above, stormwater and drainage systems once considered non-point sources are now registered and permitted under the National Pollutant Discharge Elimination Program (NPDES) (DEP 2009e). In contrast to turbidity in freshwater, in more haline (salty) portions of the LSJR, scattering of light is dominantly from materials that are of larger size, such as sediment (Gallegos 2005).
Periods of drought and rainfall can significantly affect turbidity. During periods of drought, flow from the tannin-stained backwaters decreases dramatically but the flow from the clear springs diminishes less. When this happens, the water may become significantly clearer and optical absorption by CDOM diminishes to below normal levels. With decreased CDOM and higher light penetration, phytoplankton are able to use the high nutrient concentrations more efficiently and readily undergo accelerated growth (Phlips, et al. 2007). In rainy periods after a drought, the St. Johns River may actually become more darkly stained from CDOM than usual, as rainfall moves the stalled and tannin-stained waters into the mainstem of the LSJR again. Under these conditions, CDOM absorption is the most influential optical property in a blackwater system such as the LSJR (Phlips, et al. 2000). In other events, and at specific locations and times, phytoplankton or NAP will dominate light loss in the water column and can be assessed by comparing turbidity levels with chlorophyll-a levels, which indicate algal content.
Turbidity levels in tributaries can increase during periods of drought under certain conditions, such as near constant industrial and WWTF output, algal blooms, or, more commonly after episodic rain events. For instance, sediment from construction, land clearing and timber harvesting sites, coupled with stormwater runoff, can be washed into the adjacent waters and overwhelm the other components. It is not difficult to spot sediment-laden water due to its appearance, often having a resemblance to “coffee with cream,” as shown in Figure 2.22 for example.
Turbidity (algal and sediment particulate) and color are the two primary light attenuating factors in the LSJR that prevent light from reaching rooted submerged plants and thus hinder aquatic photosynthesis. Small plants and plantlike bacteria have evolved to float or suspend themselves in the upper levels of the water column to remain in the sunlight. At high concentration their combined scattering may not pass sufficient light to large plants attached to the bottom, like the river grasses that feed and serve as nursery habitat for juvenile fish and shrimp. Submerged aquatic vegetation (SAV) can suffer from a lack of light resulting from high turbidity and from sediment cover, from shading by smaller plants coating their leaf surfaces, or masking by floating algae. This has a large impact on animals, which depend on the grasses for food and shelter.
Figure 2.23 shows turbidity values in the LSJR since 1997. The box indicates the median ± 25% of the data points (middle 50%). In several years, the highest value recorded was significantly higher than the interquartile range described by the green box; for those years, the high value is higher than the maximum value on the graph. A background turbidity level in the LSJR varies from single digit values to 12-15 Nephelometric Turbidity Units (NTUs) along the mainstem (Armingeon 2008), and anything over 29 NTUs above background is considered to exceed Florida state standards (62-302 F.A.C.; DEP 2013l). While the state criterion for turbidity is 29 NTU above background, background levels vary in the LSJRB; therefore, 29 NTU has been used as the threshold in the graphs.
Over this period, there have been changes in measurement techniques, spatial sampling changes, and many other factors, but clearly since 1997, the median value of turbidity in the LSJR has improved and is below the acceptable limit.
Algal blooms (see previous section) can dominate turbidity when excess nutrient and sufficient background algal concentrations combine to produce prolific growth of the algal biomass. In this situation, the planktonic or filamentous algae can reduce visible depth, affecting the rooted submerged aquatic vegetation. This is referred to as a hypereutrophic condition. A good discussion of trophic state is found on the website of the Institute of Food and Agricultural Sciences at the University of Florida (IFAS 2009). While high trophic state index (TSI) values indicate high primary (plant) productivity, often that is part of an unbalanced ecosystem with very high nutrient and a large algal biomass that has large fluctuations in dissolved oxygen. A reduction in water clarity due to algal blooms is distinguishable from sediment turbidity by measurement of total chlorophyll-a at a level greater than 40 µg/L (SCCF 2014). This is not an optimum, healthy state for the entire ecosystem of the water body.
2.5.2. Data Sources
The primary source for this evaluation is the Florida STORET database and the EPA-mandated reports required by the CWA, such as the Florida 303(d) report of impaired waters. These reports become the basis for future water quality management and restoration efforts. These are publicly available online at DEP 2004 and DEP 2009d. Previous versions of this report used EPA STORET data instead of the Florida STORET data used this year.
In 1998, under the Florida standards (62-303 F.A.C.; DEP 2013l), 16 waterbodies in the LSRJB were listed as impaired for turbidity. Many of these were urban streams between the city of Jacksonville and Mayport, areas where urban runoff may have been a problem. Many have since been “delisted” in the CWA process. This may truly indicate substantial improvements, but it may also have been partly a function of the sampling timing during pre-hurricane drought conditions in 2004, which greatly reduced runoff and associated turbidity. For example: the earlier 303(d) report listed Cedar River and Goodbys Creek, as well as the mainstem of the river above the Dames Point area, at high risk of turbidity impairment, while later assessments, based on sampling in 2004, did not find turbidity impairments. Additionally, we have chosen to use virtually all the STORET data in spite of changes in methodology, uneven spatial and temporal sampling, and other issues that limit both the validity and generalization of the trend.
2.5.4. Current Conditions
Based on current data available from STORET, turbidity conditions seem to be satisfactory for the LSJRB, as seen in the figure above. Reported violations of sediment control practices from work sites resulting in high turbidity events still exist, but progress is being made. In 2016, the highest turbidity value observed was 70.10 NTU. Year to year, these values vary due to rainfall events, land-disturbing activities, and other such occurrences.
In May 2009, the following waterbodies were included in the final list of waterbodies proposed for delisting from the Florida 303(d) list: Goodbys Creek (WBID 2326), Cedar River (WBID 2262), Wills Branch (North Prong WBID 2282), Grog Branch (WBID 2407), and Butcher Pen Creek (WBID 2322) (DEP 2009c). These five waterbodies had been included in the previous draft delist list.
2.5.5. Trend and Future Outlook
Current management of turbidity in Duval County, for example, includes a requirement for land-disturbing activities to be overseen by a developer’s certified staff, routine visits of land-disturbing sites, review of erosion control plans, and a citizen reporting mechanism. Heightened public awareness and improved engineering sediment control practices are bringing improvements in this area. Finable events over the past few years and the press they received will help keep the pressure on proper engineering practices. Vigilance in design of retention and detention ponds, sediment fences and public monitoring all can help. Reporting of turbidity events and sediment discharges near land-clearing and construction projects, particularly future Developments of Regional Impact (DRI) and monitoring existing municipal separate storm sewer system (MS4) areas for storm runoff should help ensure the best outcomes for the LSJR. Tributaries are particularly prone to turbidity events after a heavy rainfall.